It was a very straightforward swap with the only hangup being the line from the stock MC to the splitter was too short. A quick trip to the cycle salvage yard solved that problem. I got a line off a kawasaki that is WAY to long now, but it works, and I was able to bleed the system well.
BLEEDING! Man I don't know how anybody bleeds their stock FZR systems. With only two bleed nipples down by the calipers it seems like it would take forever! With the newer style master cylinders (with a bleed nipple on the MC) it literally took me 5 minutes to get an amazingly firm lever feel.
Also, the main reason why I did the swap was because my old (stock) MC was sticking, even after heavy doses of grease. It was like i was selecting notches of braking force, which was not good for modulation. This MC owns the old one in smoothness and progressiveness.
Overall, I'm extremely happy with the swap.
EXCEPT for now i can't see my coolant gauge

Now the pics:

